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Yttrium in PDB 1k7l: The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide.

Protein crystallography data

The structure of The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide., PDB code: 1k7l was solved by H.E.Xu, M.H.Lambert, V.G.Montana, L.B.Moore, J.L.Collins, J.A.Oplinger, S.A.Kliewer, R.T.Gampe Jr., D.D.Mckee, J.T.Moore, T.M.Willson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.561, 121.597, 121.994, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Yttrium Binding Sites:

The binding sites of Yttrium atom in the The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide. (pdb code 1k7l). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total 2 binding sites of Yttrium where determined in the The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide., PDB code: 1k7l:
Jump to Yttrium binding site number: 1; 2;

Yttrium binding site 1 out of 2 in 1k7l

Go back to Yttrium Binding Sites List in 1k7l
Yttrium binding site 1 out of 2 in the The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide.


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Y469

b:52.1
occ:1.00
OE2 C:GLU267 2.5 68.9 1.0
OE1 C:GLU451 2.7 74.5 1.0
CG C:ASP453 2.9 64.5 1.0
OD1 C:ASP453 3.1 58.2 1.0
CB C:ASP453 3.3 63.1 1.0
OD2 C:ASP453 3.3 67.4 1.0
CD C:GLU451 3.5 75.5 1.0
CD C:GLU267 3.7 70.9 1.0
OE2 C:GLU451 3.8 77.6 1.0
N C:ASP453 4.2 64.6 1.0
CA C:ASP453 4.3 63.1 1.0
OE1 C:GLU267 4.3 69.5 1.0
CG C:GLU451 4.6 74.9 1.0
NH2 C:ARG348 4.7 45.3 1.0
CG C:GLU267 4.8 70.8 1.0

Yttrium binding site 2 out of 2 in 1k7l

Go back to Yttrium Binding Sites List in 1k7l
Yttrium binding site 2 out of 2 in the The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide.


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 2 of The 2.5 Angstrom Resolution Crystal Structure of the Human Pparalpha Ligand Binding Domain Bound with GW409544 and A Co-Activator Peptide. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Y469

b:59.4
occ:1.00
OE2 E:GLU451 2.6 71.0 1.0
OE2 E:GLU267 2.6 61.9 1.0
OD2 E:ASP453 2.7 66.1 1.0
OE1 E:GLU267 2.9 62.5 1.0
OE1 E:GLU451 3.0 72.3 1.0
CD E:GLU267 3.1 63.2 1.0
CD E:GLU451 3.1 72.1 1.0
CG E:ASP453 3.4 66.3 1.0
CB E:ASP453 3.9 64.5 1.0
OD1 E:ASP453 4.3 66.2 1.0
N E:ASP453 4.5 66.3 1.0
CG E:GLU267 4.5 64.7 1.0
CG E:GLU451 4.6 73.1 1.0
CA E:ASP453 4.8 64.3 1.0
N E:SER452 4.9 72.3 1.0
NH1 E:ARG348 4.9 50.9 1.0
CA E:GLU451 5.0 75.1 1.0

Reference:

H.E.Xu, M.H.Lambert, V.G.Montana, K.D.Plunket, L.B.Moore, J.L.Collins, J.A.Oplinger, S.A.Kliewer, R.T.Gampe Jr., D.D.Mckee, J.T.Moore, T.M.Willson. Structural Determinants of Ligand Binding Selectivity Between the Peroxisome Proliferator-Activated Receptors. Proc.Natl.Acad.Sci.Usa V. 98 13919 2001.
ISSN: ISSN 0027-8424
PubMed: 11698662
DOI: 10.1073/PNAS.241410198
Page generated: Wed Dec 16 02:40:45 2020

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