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Yttrium in PDB 1py0: Crystal Structure of E51C/E54C Psaz From A.Faecalis with Clanp Probe

Protein crystallography data

The structure of Crystal Structure of E51C/E54C Psaz From A.Faecalis with Clanp Probe, PDB code: 1py0 was solved by M.Prudencio, J.Rohovec, J.A.Peters, E.Tocheva, M.J.Boulanger, M.E.Murphy, H.J.Hupkes, W.Kosters, A.Impagliazzo, M.Ubbink, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.01 / 2.00
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 42.700, 42.700, 116.900, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 23.2

Other elements in 1py0:

The structure of Crystal Structure of E51C/E54C Psaz From A.Faecalis with Clanp Probe also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Crystal Structure of E51C/E54C Psaz From A.Faecalis with Clanp Probe (pdb code 1py0). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total only one binding site of Yttrium was determined in the Crystal Structure of E51C/E54C Psaz From A.Faecalis with Clanp Probe, PDB code: 1py0:

Yttrium binding site 1 out of 1 in 1py0

Go back to Yttrium Binding Sites List in 1py0
Yttrium binding site 1 out of 1 in the Crystal Structure of E51C/E54C Psaz From A.Faecalis with Clanp Probe


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Crystal Structure of E51C/E54C Psaz From A.Faecalis with Clanp Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y125

b:78.1
occ:0.70
O5 A:YMA195 2.4 71.2 0.7
O1 A:YMA195 2.7 75.8 0.7
C4 A:YMA195 3.1 75.0 0.7
N2 A:YMA195 3.1 74.4 0.7
C8 A:YMA195 3.2 71.4 0.7
O7 A:YMA195 3.3 73.8 0.7
C2 A:YMA195 3.3 74.3 0.7
N1 A:YMA195 3.4 74.1 0.7
C11 A:YMA195 3.4 70.7 0.7
C6 A:YMA195 3.4 75.8 0.7
O3 A:YMA195 3.4 72.3 0.7
N3 A:YMA195 3.4 69.1 0.7
C14 A:YMA195 3.4 65.7 0.7
C3 A:YMA195 3.5 74.7 0.7
C15 A:YMA195 3.6 61.5 0.7
O6 A:YMA195 3.6 62.6 0.7
C9 A:YMA195 3.6 65.8 0.7
N4 A:YMA195 3.6 69.2 0.7
O8 A:YMA195 3.6 73.9 0.7
O A:HOH265 3.6 47.8 1.0
C5 A:YMA195 3.7 75.3 0.7
C10 A:YMA195 3.7 72.8 0.7
C7 A:YMA195 3.8 72.9 0.7
C1 A:YMA195 3.9 74.6 0.7
C17 A:YMA195 4.1 63.0 0.7
C13 A:YMA195 4.1 72.0 0.7
C12 A:YMA195 4.3 70.5 0.7
N5 A:YMA195 4.4 56.1 0.7
O2 A:YMA195 4.5 76.3 0.7
C16 A:YMA195 4.9 48.2 0.7

Reference:

M.Prudencio, J.Rohovec, J.A.Peters, E.Tocheva, M.J.Boulanger, M.E.Murphy, H.J.Hupkes, W.Kosters, A.Impagliazzo, M.Ubbink. A Caged Lanthanide Complex As A Paramagnetic Shift Agent For Protein uc(Nmr). Chemistry V. 10 3252 2004.
ISSN: ISSN 0947-6539
PubMed: 15224334
DOI: 10.1002/CHEM.200306019
Page generated: Wed Dec 16 02:40:44 2020

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