The binding sites of Yttrium atom in the structure of Crystal Strcuture of Class II Fructose-Bisphosphate Aldolase From Thermus Aquaticus in Complex With Y (pdb code 1rvg). This binding sites where shown with 5.0 Angstroms radius around Yttrium atom.
The 1rvg structure was solved by T.IZARD, J.SYGUSCH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 40.0-2.0 | | Space group | P121 | | a (A) | 99.860 | | b (A) | 57.550 | | c (A) | 138.617 | | alpha (°) | 90.00 | | beta (°) | 90.26 | | gamma (°) | 90.00 | | Rfactor (%) | 22.5 | | Rfree (%) | 25.9 |
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Yttrium binding site 1 out of 1 in 1rvg
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Yttrium in the PDB 1rvg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Yttrium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His81, A: Asp102, A: Ser104, A: His105, A: Glu132, A: So41609, A: Hoh1964, A: Hoh2006, | conact list:
| Atom | Atom | Distance (A) | | Y | ND1 A:His81 | 4.38 | | Y | CE1 A:His81 | 4.21 | | Y | CB A:Asp102 | 4.51 | | Y | OD2 A:Asp102 | 2.68 | | Y | OD1 A:Asp102 | 2.68 | | Y | CG A:Asp102 | 3.03 | | Y | N A:Ser104 | 4.61 | | Y | CB A:Ser104 | 4.04 | | Y | OG A:Ser104 | 2.80 | | Y | CA A:Ser104 | 4.84 | | Y | ND1 A:His105 | 4.90 | | Y | OE1 A:Glu132 | 3.85 | | Y | OE1 A:Glu132 | 4.02 | | Y | OE2 A:Glu132 | 2.86 | | Y | OE2 A:Glu132 | 2.92 | | Y | CD A:Glu132 | 3.62 | | Y | CD A:Glu132 | 3.70 | | Y | CG A:Glu132 | 4.84 | | Y | CG A:Glu132 | 4.83 | | Y | S A:So41609 | 3.49 | | Y | O1 A:So41609 | 3.32 | | Y | O2 A:So41609 | 3.20 | | Y | O4 A:So41609 | 4.96 | | Y | O3 A:So41609 | 3.40 | | Y | O A:Hoh1964 | 2.93 | | Y | O A:Hoh2006 | 4.68 |
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