Yttrium in the structure of Crystal Structure of the Major House Dust Mite Allergen Der P 1 in Its Pro Form At 1.61 A Resolution (pdb 1xkg)

The binding sites of Yttrium atom in the structure of Crystal Structure of the Major House Dust Mite Allergen Der P 1 in Its Pro Form At 1.61 A Resolution (pdb code 1xkg). This binding sites where shown with 5.0 Angstroms radius around Yttrium atom. The 1xkg structure was solved by K.MENO, P.B.THORSTED, M.GAJHEDE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 40.0-1.6 Space group P212121 a (A) 64.659 b (A) 66.557 c (A) 73.388 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 15.3 Rfree (%) 18.6 Yttrium Binding Sites: Yttrium binding site 1 out of 1 in 1xkg Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Yttrium in the PDB 1xkg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Yttrium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Arg106, A: Glu124, A: Asp136, A: Leu137, A: Ala138, A: Glu139, A: Glu171, A: So4501, A: Hoh603, A: Hoh604, A: Hoh607, A: Hoh614, A: Hoh618, conact list: Atom Atom Distance (A) Y CZ A:Arg106 4.83 Y NE A:Arg106 4.70 Y NH2 A:Arg106 4.93 Y OE2 A:Glu124 4.58 Y O A:Asp136 4.98 Y CB A:Asp136 4.72 Y OD2 A:Asp136 3.89 Y C A:Asp136 4.50 Y OD1 A:Asp136 2.35 Y CG A:Asp136 3.46 Y CA A:Asp136 4.84 Y O A:Leu137 2.52 Y N A:Leu137 4.28 Y C A:Leu137 3.71 Y CA A:Leu137 4.62 Y N A:Ala138 4.60 Y CA A:Ala138 4.59 Y N A:Glu139 4.33 Y OE1 A:Glu139 2.35 Y CB A:Glu139 4.99 Y OE2 A:Glu139 3.69 Y CD A:Glu139 3.34 Y CG A:Glu139 4.67 Y OE1 A:Glu171 2.37 Y CB A:Glu171 4.39 Y OE2 A:Glu171 3.93 Y CD A:Glu171 3.29 Y CG A:Glu171 4.23 Y S A:So4501 4.98 Y O1 A:So4501 4.54 Y O3 A:So4501 4.23 Y O A:Hoh603 2.41 Y O A:Hoh604 2.43 Y O A:Hoh607 2.46 Y O A:Hoh614 2.40 Y O A:Hoh618 4.75 interactive model: