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Yttrium in PDB 1xvq: Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis

Protein crystallography data

The structure of Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis, PDB code: 1xvq was solved by B.S.Rho, J.D.Pedelacq, L.W.Hung, J.M.Holton, D.Vigil, S.I.Kim, M.S.Park, T.C.Terwilliger, Tb Structural Genomics Consortium (Tbsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.89 / 1.75
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 64.555, 64.555, 196.788, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 22.5

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis (pdb code 1xvq). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total 3 binding sites of Yttrium where determined in the Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis, PDB code: 1xvq:
Jump to Yttrium binding site number: 1; 2; 3;

Yttrium binding site 1 out of 3 in 1xvq

Go back to Yttrium Binding Sites List in 1xvq
Yttrium binding site 1 out of 3 in the Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y201

b:47.2
occ:1.00
OE1 A:GLU16 2.5 24.7 1.0
CD A:GLU16 2.7 31.0 1.0
OE2 A:GLU16 2.7 31.3 1.0
CG A:GLU16 3.7 32.6 1.0
O A:HOH548 4.8 45.9 1.0
CB A:GLU16 4.8 31.1 1.0

Yttrium binding site 2 out of 3 in 1xvq

Go back to Yttrium Binding Sites List in 1xvq
Yttrium binding site 2 out of 3 in the Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 2 of Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y202

b:36.4
occ:0.33
OD1 A:ASP40 2.2 34.1 1.0
CG A:ASP40 3.3 36.6 1.0
CB A:ASP40 3.9 33.0 1.0
OD2 A:ASP40 4.4 39.9 1.0
OG A:SER38 4.9 28.7 1.0

Yttrium binding site 3 out of 3 in 1xvq

Go back to Yttrium Binding Sites List in 1xvq
Yttrium binding site 3 out of 3 in the Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 3 of Crystal Structure of Thiol Peroxidase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y203

b:42.4
occ:1.00
OE1 A:GLU149 2.3 27.7 1.0
CD A:GLU149 3.1 31.3 1.0
OE2 A:GLU149 3.4 35.8 1.0
CG A:GLU149 4.3 27.9 1.0
OD1 A:ASN9 4.4 27.1 1.0
O A:HOH470 5.0 43.0 1.0

Reference:

B.S.Rho, L.W.Hung, J.M.Holton, D.Vigil, S.I.Kim, M.S.Park, T.C.Terwilliger, J.D.Pedelacq. Functional and Structural Characterization of A Thiol Peroxidase From Mycobacterium Tuberculosis. J.Mol.Biol. V. 361 850 2006.
ISSN: ISSN 0022-2836
PubMed: 16884737
DOI: 10.1016/J.JMB.2006.05.076
Page generated: Mon Jan 25 16:07:15 2021

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