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Yttrium in PDB 3io1: Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae

Protein crystallography data

The structure of Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae, PDB code: 3io1 was solved by D.Kumaran, K.Baumann, S.K.Burley, S.Swaminathan, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.02 / 2.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 183.390, 48.519, 107.998, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 26

Other elements in 3io1:

The structure of Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae (pdb code 3io1). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total only one binding site of Yttrium was determined in the Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae, PDB code: 3io1:

Yttrium binding site 1 out of 1 in 3io1

Go back to Yttrium Binding Sites List in 3io1
Yttrium binding site 1 out of 1 in the Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y500

b:84.2
occ:1.00
OD2 A:ASP5 2.4 72.5 1.0
O A:HOH479 2.5 24.0 1.0
OE1 A:GLU6 2.5 69.5 1.0
O A:HOH481 2.6 46.1 1.0
CD A:GLU6 3.5 69.3 1.0
CG A:ASP5 3.5 73.7 1.0
OE2 A:GLU6 3.6 68.5 1.0
CB A:ASP5 3.9 71.6 1.0
CA A:GLN3 4.5 64.2 1.0
OD1 A:ASP5 4.6 74.0 1.0
N A:GLN3 4.8 67.4 1.0
N A:GLU6 4.8 68.8 1.0
CG A:GLU6 4.9 68.4 1.0
N A:ASP5 4.9 70.3 1.0
CA A:ASP5 4.9 70.2 1.0

Reference:

D.Kumaran, K.Baumann, S.K.Burley, S.Swaminathan. Crystal Structure of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae To Be Published.
Page generated: Wed Dec 16 02:40:54 2020

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