Atomistry » Yttrium » PDB 3ph6-6the » 3syx
Atomistry »
  Yttrium »
    PDB 3ph6-6the »
      3syx »

Yttrium in PDB 3syx: Crystal Structure of the WH1 Domain From Human Sprouty-Related, EVH1 Domain-Containing Protein. Northeast Structural Genomics Consortium Target HR5538B.

Protein crystallography data

The structure of Crystal Structure of the WH1 Domain From Human Sprouty-Related, EVH1 Domain-Containing Protein. Northeast Structural Genomics Consortium Target HR5538B., PDB code: 3syx was solved by S.Vorobiev, M.Su, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosanti, R.Shastry, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.38 / 2.45
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 52.754, 52.754, 121.638, 90.00, 90.00, 120.00
R / Rfree (%) 22.8 / 27.1

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Crystal Structure of the WH1 Domain From Human Sprouty-Related, EVH1 Domain-Containing Protein. Northeast Structural Genomics Consortium Target HR5538B. (pdb code 3syx). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total only one binding site of Yttrium was determined in the Crystal Structure of the WH1 Domain From Human Sprouty-Related, EVH1 Domain-Containing Protein. Northeast Structural Genomics Consortium Target HR5538B., PDB code: 3syx:

Yttrium binding site 1 out of 1 in 3syx

Go back to Yttrium Binding Sites List in 3syx
Yttrium binding site 1 out of 1 in the Crystal Structure of the WH1 Domain From Human Sprouty-Related, EVH1 Domain-Containing Protein. Northeast Structural Genomics Consortium Target HR5538B.


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Crystal Structure of the WH1 Domain From Human Sprouty-Related, EVH1 Domain-Containing Protein. Northeast Structural Genomics Consortium Target HR5538B. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y201

b:51.2
occ:0.50
OE2 A:GLU121 2.3 60.6 1.0
OD1 A:ASP122 2.3 0.7 1.0
CG A:ASP122 3.1 33.1 1.0
CD A:GLU121 3.3 57.8 1.0
NH1 A:ARG118 3.4 90.1 1.0
OD2 A:ASP122 3.4 65.1 1.0
OE1 A:GLU121 3.5 71.6 1.0
NH2 A:ARG118 4.1 70.0 1.0
CZ A:ARG118 4.2 76.7 1.0
OE1 A:GLN125 4.3 0.6 1.0
CB A:ASP122 4.4 52.1 1.0
CA A:ASP122 4.6 46.9 1.0
CG A:GLU121 4.6 55.6 1.0
N A:ASP122 4.7 37.4 1.0
O A:ARG118 4.8 59.8 1.0
CB A:GLU121 5.0 61.2 1.0

Reference:

S.Vorobiev, M.Su, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosanti, R.Shastry, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of the WH1 Domain From Human Sprouty-Related, EVH1 Domain-Containing Protein. To Be Published.
Page generated: Wed Dec 16 02:41:12 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy