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Yttrium in PDB 4g6u: Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli

Protein crystallography data

The structure of Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli, PDB code: 4g6u was solved by R.P.Morse, K.Nikolakakis, J.Willet, E.Gerrick, D.A.Low, C.S.Hayes, C.W.Goulding, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.90 / 2.35
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 81.699, 103.631, 125.173, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22.9

Other elements in 4g6u:

The structure of Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 1 atom

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli (pdb code 4g6u). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total 3 binding sites of Yttrium where determined in the Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli, PDB code: 4g6u:
Jump to Yttrium binding site number: 1; 2; 3;

Yttrium binding site 1 out of 3 in 4g6u

Go back to Yttrium Binding Sites List in 4g6u
Yttrium binding site 1 out of 3 in the Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Y204

b:36.0
occ:1.00
OD2 B:ASP66 2.6 37.5 1.0
O B:HOH315 2.6 26.6 1.0
OXT B:ACT203 2.7 46.3 1.0
OE1 B:GLU70 2.7 51.1 1.0
O B:ACT203 2.8 40.6 1.0
O B:HOH316 2.8 35.7 1.0
OE2 B:GLU70 2.8 43.6 1.0
CD B:GLU70 3.1 46.1 1.0
C B:ACT203 3.2 42.4 1.0
CG B:ASP66 3.6 39.0 1.0
OD1 B:ASP66 3.8 41.8 1.0
O B:HOH319 4.0 53.1 1.0
O B:HOH308 4.2 31.3 1.0
O B:THR64 4.4 27.2 1.0
N B:ASP66 4.5 31.4 1.0
CG B:GLU70 4.6 42.1 1.0
CH3 B:ACT203 4.7 38.3 1.0
CB B:ASP66 4.9 36.2 1.0
CG2 B:VAL67 4.9 30.5 1.0

Yttrium binding site 2 out of 3 in 4g6u

Go back to Yttrium Binding Sites List in 4g6u
Yttrium binding site 2 out of 3 in the Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 2 of Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Y205

b:42.9
occ:1.00
OD1 B:ASP61 2.7 34.6 1.0
O B:HOH312 2.7 39.5 1.0
O B:ACT201 2.8 55.3 1.0
O B:HOH327 2.8 44.5 1.0
OD2 B:ASP61 2.8 35.0 1.0
OXT B:ACT201 2.8 56.9 1.0
O B:HOH322 2.8 49.2 1.0
CG B:ASP61 3.1 33.4 1.0
C B:ACT201 3.1 55.7 1.0
CH3 B:ACT201 4.5 53.0 1.0
O B:GLN57 4.5 30.8 1.0
CB B:ASP61 4.5 30.8 1.0
O B:HOH303 4.6 40.1 1.0
OE1 B:GLN57 4.6 78.3 1.0
CE1 B:PHE37 4.6 35.5 1.0
O B:HOH318 4.7 42.2 1.0

Yttrium binding site 3 out of 3 in 4g6u

Go back to Yttrium Binding Sites List in 4g6u
Yttrium binding site 3 out of 3 in the Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 3 of Cdia-Ct/Cdii Toxin and Immunity Complex From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Y206

b:0.5
occ:1.00
OE2 B:GLU153 2.7 95.2 1.0
OE1 B:GLU153 3.2 90.1 1.0
CD B:GLU153 3.3 87.9 1.0
CG B:GLU153 4.8 76.2 1.0

Reference:

R.P.Morse, K.C.Nikolakakis, J.L.Willett, E.Gerrick, D.A.Low, C.S.Hayes, C.W.Goulding. Structural Basis of Toxicity and Immunity in Contact-Dependent Growth Inhibition (Cdi) Systems. Proc.Natl.Acad.Sci.Usa V. 109 21480 2012.
ISSN: ISSN 0027-8424
PubMed: 23236156
DOI: 10.1073/PNAS.1216238110
Page generated: Wed Dec 16 02:41:13 2020

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