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Yttrium in PDB 6ksu: Crystal Structure of Sure

Protein crystallography data

The structure of Crystal Structure of Sure, PDB code: 6ksu was solved by R.Zhai, T.Mori, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.53 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.738, 150.370, 64.771, 90.00, 110.71, 90.00
R / Rfree (%) 21.2 / 25.8

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Crystal Structure of Sure (pdb code 6ksu). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total only one binding site of Yttrium was determined in the Crystal Structure of Sure, PDB code: 6ksu:

Yttrium binding site 1 out of 1 in 6ksu

Go back to Yttrium Binding Sites List in 6ksu
Yttrium binding site 1 out of 1 in the Crystal Structure of Sure


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Crystal Structure of Sure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Y502

b:53.0
occ:0.99
OE2 B:GLU123 2.5 71.8 1.0
OE2 B:GLU126 2.7 49.1 1.0
CG B:GLU123 2.9 46.8 1.0
CD B:GLU123 3.1 53.4 1.0
OE1 B:GLU126 3.1 57.3 1.0
CD B:GLU126 3.2 54.0 1.0
OE1 B:GLU123 4.3 58.0 1.0
CB B:GLU123 4.4 49.0 1.0
CG B:GLU126 4.5 54.5 1.0
O B:GLU123 4.7 51.5 1.0
N B:ASP125 4.8 51.0 1.0
C B:GLU123 4.9 45.6 1.0

Reference:

K.Matsuda, R.Zhai, T.Mori, M.Kobayashi, A.Sano, I.Abe, T.Wakimoto. Heterochiral Coupling in Non-Ribosomal Peptide Macrolactamization Nat Catal 2020.
ISSN: ESSN 2520-1158
DOI: 10.1038/S41929-020-0456-7
Page generated: Wed Dec 16 02:41:17 2020

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