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Yttrium in PDB 6nfq: Copc From Pseudomonas Fluorescens

Protein crystallography data

The structure of Copc From Pseudomonas Fluorescens, PDB code: 6nfq was solved by M.J.Maher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.00 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 77.730, 111.319, 82.222, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 26

Other elements in 6nfq:

The structure of Copc From Pseudomonas Fluorescens also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Copc From Pseudomonas Fluorescens (pdb code 6nfq). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total only one binding site of Yttrium was determined in the Copc From Pseudomonas Fluorescens, PDB code: 6nfq:

Yttrium binding site 1 out of 1 in 6nfq

Go back to Yttrium Binding Sites List in 6nfq
Yttrium binding site 1 out of 1 in the Copc From Pseudomonas Fluorescens


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Copc From Pseudomonas Fluorescens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y202

b:10.8
occ:0.50
O A:HOH312 2.2 28.8 1.0
OE1 A:GLU68 2.4 41.5 1.0
OE2 A:GLU68 2.4 36.0 1.0
CD A:GLU68 2.7 35.5 1.0
CG A:GLU68 4.2 37.7 1.0
O B:VAL106 4.5 30.1 1.0
OE2 B:GLU54 4.5 37.3 1.0
O B:HOH301 4.6 33.4 1.0
O B:HOH315 4.7 29.5 1.0
CB A:GLU68 5.0 35.8 1.0

Reference:

S.R.Udagedara, C.J.K.Wijekoon, Z.Xiao, A.G.Wedd, M.J.Maher. The Crystal Structure of the Copc Protein From Pseudomonas Fluorescens Reveals Amended Classifications For the Copc Protein Family. J. Inorg. Biochem. V. 195 194 2019.
ISSN: ISSN 1873-3344
PubMed: 30981030
DOI: 10.1016/J.JINORGBIO.2019.03.007
Page generated: Wed Dec 16 02:41:18 2020

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