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Yttrium in PDB 6xjj: Structure of Non-Heme Iron Enzyme Tropc: Radical Tropolone Biosynthesis

Protein crystallography data

The structure of Structure of Non-Heme Iron Enzyme Tropc: Radical Tropolone Biosynthesis, PDB code: 6xjj was solved by L.Mallik, T.J.Doyon, A.R.H.Narayan, M.Koutmos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.07 / 2.70
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 111.014, 111.014, 89.889, 90, 90, 120
R / Rfree (%) 21 / 25.1

Other elements in 6xjj:

The structure of Structure of Non-Heme Iron Enzyme Tropc: Radical Tropolone Biosynthesis also contains other interesting chemical elements:

Iron (Fe) 1 atom

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Structure of Non-Heme Iron Enzyme Tropc: Radical Tropolone Biosynthesis (pdb code 6xjj). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total only one binding site of Yttrium was determined in the Structure of Non-Heme Iron Enzyme Tropc: Radical Tropolone Biosynthesis, PDB code: 6xjj:

Yttrium binding site 1 out of 1 in 6xjj

Go back to Yttrium Binding Sites List in 6xjj
Yttrium binding site 1 out of 1 in the Structure of Non-Heme Iron Enzyme Tropc: Radical Tropolone Biosynthesis


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Structure of Non-Heme Iron Enzyme Tropc: Radical Tropolone Biosynthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y1001

b:144.8
occ:0.56
OD2 A:ASP118 2.6 134.8 1.0
OD1 A:ASP118 3.2 112.8 1.0
CG A:ASP118 3.3 117.8 1.0
HB3 A:PRO116 4.0 85.7 1.0
HB2 A:PRO116 4.1 85.7 1.0
CB A:PRO116 4.5 85.7 1.0
HG2 A:PRO116 4.5 90.2 1.0
CB A:ASP118 4.7 103.6 1.0
H A:ASP118 4.9 93.5 1.0
CG A:PRO116 4.9 90.2 1.0

Reference:

T.J.Doyon, K.Skinner, D.Yang, L.Mallik, T.Wymore, M.Koutmos, P.M.Zimmerman, A.Narayan. Radical Tropolone Biosynthesis Chemrxiv 2020.
DOI: 10.26434/CHEMRXIV.12780044.V1
Page generated: Mon Jul 12 16:15:22 2021

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