Atomistry » Yttrium » PDB 1dde-3ph5 » 3bol
Atomistry »
  Yttrium »
    PDB 1dde-3ph5 »
      3bol »

Yttrium in PDB 3bol: Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+

Enzymatic activity of Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+

All present enzymatic activity of Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+:
2.1.1.13;

Protein crystallography data

The structure of Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+, PDB code: 3bol was solved by M.Koutmos, J.L.Smith, M.L.Ludwig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.62 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.626, 85.841, 125.587, 90.00, 100.67, 90.00
R / Rfree (%) 19.3 / 22.8

Other elements in 3bol:

The structure of Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+ also contains other interesting chemical elements:

Potassium (K) 2 atoms
Zinc (Zn) 3 atoms

Yttrium Binding Sites:

The binding sites of Yttrium atom in the Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+ (pdb code 3bol). This binding sites where shown within 5.0 Angstroms radius around Yttrium atom.
In total only one binding site of Yttrium was determined in the Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+, PDB code: 3bol:

Yttrium binding site 1 out of 1 in 3bol

Go back to Yttrium Binding Sites List in 3bol
Yttrium binding site 1 out of 1 in the Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+


Mono view


Stereo pair view

A full contact list of Yttrium with other atoms in the Y binding site number 1 of Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima Complexed with ZN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Y705

b:34.7
occ:1.00
OD1 A:ASP253 2.2 19.6 1.0
O A:HOH804 3.1 37.8 1.0
CG A:ASP253 3.2 25.6 1.0
OD2 A:ASP253 3.4 30.0 1.0
ND1 A:HIS252 4.0 36.6 1.0
O A:HOH746 4.3 25.0 1.0
CB A:ASP253 4.5 23.0 1.0
CE1 A:HIS252 4.6 37.8 1.0
CA A:ASP253 4.8 22.6 1.0
N A:ASP253 4.9 23.1 1.0

Reference:

M.Koutmos, R.Pejchal, T.M.Bomer, R.G.Matthews, J.L.Smith, M.L.Ludwig. Metal Active Site Elasticity Linked to Activation of Homocysteine in Methionine Synthases. Proc.Natl.Acad.Sci.Usa V. 105 3286 2008.
ISSN: ISSN 0027-8424
PubMed: 18296644
DOI: 10.1073/PNAS.0709960105
Page generated: Sat Oct 12 20:32:16 2024

Last articles

Mg in 6JNX
Mg in 6JMG
Mg in 6JNL
Mg in 6JLV
Mg in 6JLN
Mg in 6JLL
Mg in 6JLK
Mg in 6JLM
Mg in 6JLJ
Mg in 6JIL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy